FoldScript  1.2


News • Feb. 17, 2025: FoldScript updated to version 1.2 (see Version History)
• Feb. 3, 2025: FoldScript updated to version 1.1 with many new features (see Version History)
• Oct. 1, 2024: we are pleased to announce the release of our new Web server: FoldScript


F.A.Q.
Q: What do I need to run FoldScript?
FoldScript is operated as a Web server. It is accessible via any modern Web browser equipped with a PDF reader:

  • Supported Web browsers are:

Q: Which secondary structure element does the symbol "η" refer to in my FoldScript representation?
The η symbol refers to a 310-helix.
α-helices, 310-helices and π-helices are displayed as medium, small and large squiggles with α, η and π labels, respectively.
β-strands are displayed as arrows labeled β.
Strict β-turns and α-turns are displayed as TT and TTT letters, respectively.

Q: I have modeled a protein with a ligand and the latter does not seem to be taken into account (I do not see any contacts with it in the representation). Why?
To date, all ligands proposed by AlphaFold 3 are supported. Ligands that are not present in the table below will not be considered in the analysis performed by FoldScript:

Hetero-compound type Name Symbol
Nucleotides ADE ADP AMP ATP CYT FAD FMN GDP GTP GUA
NAD NAH NAP NDP THY URI
*
  A G C T U DA DG DC DT /
Porphyrin groups BCL BCB BPH CLA CHL HEC HEM MQ7 :
Sugars FUC GAL GLC MAN NAG SIA XYL "
Ions CA CL CO CU FE K MG MN NA ZN +
Fatty acids & miscellaneous CIT MYR OLA PLM ^


Q: How can I manually add any feature to a figure generated by FoldScript?
PDF and PostScript files generated by FoldScript can be edited using software such as Adobe Illustrator or Inkscape.
You can also generate JPG or TIFF files and use the image editing software of your choice.

Q: Can I download and install FoldScript on my computer or my server?
Due to software license restrictions, FoldScript can only be run online from this website.

Q: I have a problem that is not listed here.
Do not hesitate to contact us (espript@ibcp.fr) if you need any further information or help with FoldScript.



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